BnaGVD: A Genomic Variation Database of Rapeseed (<i>Brassica napus</i>)

Abstract Rapeseed (Brassica napus L.) is a typical polyploid crop and one of the most important oilseed crops worldwide. With rapid progress on high-throughput sequencing technologies reduction in cost, large-scale genomic data specific have become available. However, raw sequence are mostly deposited read archive National Center Biotechnology Information European Nucleotide Archive, which freely accessible to all researchers. Extensive tools for practical purposes should be developed efficiently utilize these large data. Here, we report web-based rapeseed variation database (BnaGVD, http://rapeseed.biocloud.net/home) from variations, such as single-nucleotide polymorphisms (SNPs) insertions/deletions (InDels) across worldwide collection accessions, can referred. The current release BnaGVD contains 34,591,899 high-quality SNPs 12,281,923 InDels provides search retrieve variations gene annotations 1,007 accessions germplasm. We implement variety built-in (e.g. BnaGWAS, BnaPCA BnaStructure) help users perform in-depth analyses. recommend this web resource accelerating studies functional genomics screening molecular markers breeding.